SODAR

Introduction

  • SODAR Introduction
  • Glossary

User Interface

  • User Interface Overview
  • Login View
  • User Dropdown
  • iRODS Info
  • API Token Management
  • User Profile
  • Project Overview
  • Project Members
  • Project Creation and Update
  • Project Timeline
  • Alerts

Sample Sheets

  • Sample Sheets Overview
  • Browsing Sample Sheets
  • Importing and Creating Sheets
  • Exporting Sample Sheets
  • Editing Sample Sheets
  • Sheet Version Management
  • iRODS Access Tickets
  • iRODS Delete Requests
  • Deleting Sample Sheets
  • Remote Sheet Synchronization

Landing Zones

  • Landing Zones Overview
  • Landing Zone Creation and Update
  • Browsing Landing Zones
  • Landing Zone File Transfer

Data Transfer Guides

  • iRODS Access
  • BIH Proteomics Data Transfer

External Tools

  • IGV Installation & Setup
  • IGV Opening Session & Files
  • Cyberduck File Browser for iRODS
  • WinSCP Installation & Setup

Metadata

  • Metadata Recording
  • Advanced Metadata Topics

API Documentation

  • API Documentation
  • Project Management APIs
  • Sample Sheets API
  • Landing Zones API
  • iRODS Info API
  • Taskflow Backend API
  • API Examples for Python
  • API Examples for R

SODAR Administration

  • Administration Overview
  • Installation and Deployment
  • Admin Users
  • Admin User Interface
  • ISA-Tab Templates Application
  • Ontology Access Application
  • Site App Settings Application
  • Management Commands
  • SODAR Settings
  • Other Admin Functionality
  • Site Customization
  • Upgrade Guide

SODAR Development

  • Development Overview
  • Contributing
  • Code of Conduct
  • Installation for Development
  • Development Guidelines
  • SODAR App Development
  • Development Resources

SODAR History

  • Release Notes
  • Changelog
SODAR
  • Overview: module code

All modules for which code is available

  • irodsinfo.views_api
  • landingzones.views_api
  • samplesheets.views_api
  • taskflowbackend.views_api

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