Management Commands
This section briefly lists the management commands available for SODAR
administrators with shell access, in addition to the built-in commands in Django
and used third party components. For more details on their usage, use the
-h
or --help
argument.
SODAR Core Commands
These commands originate in SODAR Core. More information can be found in the SODAR Core documentation.
addremotesite
Add remote site for remote project synchronization.
batchupdateroles
Batch update project roles and send invites.
cleanappsettings
Clean up unused application settings.
deletecache
Delete SODAR Cache entries.
geticons
Download and install the latest versions of iconify icon sets. Must be followed by
collectstatic
to take effect.synccache
Synchronize the SODAR Cache.
syncgroups
Synchronize user groups.
syncremote
Synchronize project and user data from a remote site if remote project sync is enabled.
synctaskflow
Submit missing project metadata to iRODS. Generally should only be used in development.
SODAR Commands
These commands originate from the SODAR applications and are specific to operations regarding sample sheets, landing zones, iRODS data and ontologies.
busyzones
Return list of currently busy landing zones.
importobo
Import OBO format ontology. See Ontology Access Application.
importomimm
Import OMIM catalog as an ontology. See Ontology Access Application.
inactivezones
Return list of landing zones last modified over two weeks ago.
irodsorphans
Find orphans in iRODS project collections.
syncnames
Synchronize alternative names for sample sheet material search.