This section briefly lists the management commands available for SODAR
administrators with shell access, in addition to the built-in commands in Django
and used third party components. For more details on their usage, use the
SODAR Core Commands
These commands originate in SODAR Core. More information can be found in the SODAR Core documentation.
Add remote site for remote project synchronization.
Batch update project roles and send invites.
Clean up unused application settings.
Delete SODAR Cache entries.
Download and install the latest versions of iconify icon sets. Must be followed by
collectstaticto take effect.
Synchronize the SODAR Cache.
Synchronize user groups.
Synchronize project metadata and user access in iRODS. Generally should only be used in development.
Synchronize project and user data from a remote site if remote project sync is enabled.
These commands originate from the SODAR applications and are specific to operations regarding sample sheets, landing zones, iRODS data and ontologies.
Return list of currently busy landing zones.
Import OBO format ontology. See Ontology Access Application.
Import OMIM catalog as an ontology. See Ontology Access Application.
Return list of landing zones last modified over two weeks ago.
Find orphans in iRODS project collections.
Clean up and normalize previously imported sample sheets for non-standard data or other issues. Also updates render tables and creates a backup ISA-Tab version of the normalized sheets.
Synchronize alternative names for sample sheet material search.
Build study render tables in cache for all study tables. These will be automatically built when accessing sample sheets if existing cache is not up-to-date, but this can be used to e.g. regenerate the cache if something has been changed in study table rendering.